E-Commerce Accounting & Bookkeeping Services

We help 7-figure online retailers across Shopify, Amazon, Etsy, and eBay with monthly bookkeeping, multi-channel sales tax filing, and payout reconciliations in Canada and the US.

Trusted by Retailers Across Toronto

Our E-Commerce Services by Platform

Bookkeeping and accounting for every online selling platform. Choose yours:

Shopify Accounting

Bookkeeping, payout reconciliation, GST/HST and US sales tax.

Amazon FBA Accounting

FBA fee tracking, inventory accounting, multi-state sales tax.

Etsy Accounting

Fee tracking, deposit reconciliation, sales tax for creatives.

eBay Tax Guide for Canada Obligations, Sales Tax, GSTHST Explained

eBay Accounting

Payout reconciliation, marketplace fee tracking, cross-border compliance.

SAL Can Help You If…

E-Commerce Accounting Services

Accounting and bookkeeping services built for any type of e-commerce seller in Toronto.

Reconciling Books

Monthly payout reconciliation across all platforms.

Sales Tax (Canada & US)

GST/HST and multi-state US sales tax compliance.

Inventory & COGS

Cost of goods sold and inventory valuation monthly.

Strategic Planning

Quarterly CPA check-ins and compilation engagements.

Why SAL for E-Commerce Bookkeeping?

Stripe fees, PayPal conversions, FBA charges, platform tax filings. Our ecommerce tax accountants handle this daily.

We take care of:

Real Results

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Frequently Asked Questions

Common questions about e-commerce accounting and bookkeeping services for online sellers.

What is e-commerce bookkeeping?

Tracking and reconciling sales, fees, refunds, and payouts across platforms like Shopify, Amazon, Etsy, and eBay. Ecommerce bookkeeping services handle multiple payment gateways, platform-specific fees, and timing differences between sales and deposits.

If you’re on multiple platforms, triggered US sales tax nexus, or your gross sales don’t match your bank deposits, yes. A general accountant won’t catch platform fee errors or HST double-counting. An ecommerce tax accountant will.

Register for GST/HST once you exceed $30,000/year. Some platforms remit HST to CRA on your behalf. Don’t report that as collected or you pay twice. For US sales, track which states you’ve triggered economic nexus in.

Payouts are net. Gross sales never match your bank deposit. The difference: platform fees, shipping, refunds, chargebacks, tax withheld.

QuickBooks and Xero. Both integrate with Shopify and Amazon through tools like A2X. But you still need retail bookkeeping services to reconcile payouts, categorize fees, and verify tax collected versus remitted.

Opening inventory plus purchases minus COGS equals ending inventory. If COGS exceeds purchases, something’s wrong. An accountant for retailers reconciles this monthly and flags gaps before they become audit problems.

Cash basis records revenue when money hits your bank. Accrual records when the sale happens. For e-commerce, accrual gives a clearer picture because of payout timing delays. We have the best ecommerce CPA in Canada who helps you find the most suitable method.

Fees are $800–$1,000/month per entity. It depends on your situation and needs. Book a free call for exact pricing.

No. SAL Accounting is based in Toronto, in the Financial District near Union Station, but we work with e-commerce sellers across Canada online. Payout reports, reconciliation, and tax filing are all done remotely.

Still have questions?

Let’s talk about your e-commerce accounting needs.

Resources

Accounting Software for Your Business in 2025

Best eCommerce Accounting Software in 2026: Top Picks for Online Sellers

Tax Loopholes for E-commerce Stores in Canada

Tax Loopholes for E-commerce Stores: Smart Strategies to Legally Reduce Your Tax Bill

Shopify Sage Integration Guide

Shopify Sage Integration Guide: How to Connect & Streamline Your Accounting for 2025